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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPL7A, ribosomal protein L7a
Sequence ID:NM_000972
Entrez Gene ID:6130
Ensembl ID:ENSG00000148303

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 136216864 - 136218281

NM_000972 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
133136215068136215100
34154136215776136215896
155304136216405136216554
305445136216766136216906
446525136217094136217173
526656136217451136217581
657726136217856136217925
727890136218116136218279

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3938260Full LengthBC005128ribosomal protein L7a
4053567Full LengthBC021979ribosomal protein L7a
4336858Full LengthBC073802ribosomal protein L7a
4810336Full LengthBC023624ribosomal protein L7a
4841982Full LengthBC023594ribosomal protein L7a
6090366Full LengthBC071900ribosomal protein L7a
6262332Full LengthBC071901ribosomal protein L7a
6495031Full LengthBC105290ribosomal protein L7a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000963  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000972 NP_000963 P62424 Ribosomal_L7Ae

Related Sequences

 
mRNAGenPeptSwissProt
M36072 AAA60282 P62424
BC005128 AAH05128 P62424
BC021979 AAH21979 P62424
BC023594 AAH23594 P62424
BC023624 AAH23624 P62424
BC071900 AAH71900 P62424
BC071901 AAH71901 P62424
BC073802 AAH73802 P62424
BC105290 AAI05291 P62424
DQ892698 ABM83624  
DQ895940 ABM86866  
AB056665 BAB39381 Q9BY74
AK291123 BAF83812 P62424
AK311743 BAG34686 P62424
X06705 CAA29889 P62424

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL7A NP_000963 M.musculus Rpl7a 27176 Gene Info NP_038749 100
R.norvegicus Rpl7a 296596   NP_001107863 100
A.gambiae RL7A_ANOGA 1276631   XP_316000 70
D.melanogaster RpL7A 31588   NP_511063 68
C.elegans rpl-7A 177203   NP_741371 62
N.crassa NCU04779 3876375   XP_960228 62
S.pombe rpl8 2540517   NP_595832 62
S.cerevisiae RPL8B 850682   NP_013055 59
A.thaliana AT3G62870 825462   NP_191846 58
A.thaliana AT2G47610 819374   NP_182283 58
S.cerevisiae RPL8A 856352   NP_011830 58
P.falciparum PF14_0231 811813   XP_001348405 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)