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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IRX3, iroquois homeobox 3
Sequence ID:NM_024336
Entrez Gene ID:79191
Ensembl ID:ENSG00000177508

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16q12.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 54317211 - 54320378

NM_024336 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14415431721154317651
4425085431815754318223
50916255431840854319524
162623085431969554320377

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5020235Full LengthBC023667iroquois homeobox 3
4780414IncompleteBC034328iroquois homeobox 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077312  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024336 NP_077312 P78415 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
U90308 AAB50006 P78415
BC023667 AAH23667 P78415
BC034328 AAH34328 Q8N4G7
AY335943 AAQ16549 P78415
DQ892008 ABM82934  
EU176666 ABW03467  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IRX3 NP_077312 M.musculus Irx3 16373 Gene Info NP_032419 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)