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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. GGA1, golgi-associated, gamma adaptin ear containing, ARF binding protein 1
Sequence ID:NM_001001560
NM_001001561
NM_001172687
NM_001172688
NM_013365
Entrez Gene ID:26088
Ensembl ID:ENSG00000100083

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 38004852 - 38029571

 Exon Info From UCSC:
NM_001001560
NM_001001561
NM_001172687
NM_001172688
NM_013365

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5796877Full LengthBC044629golgi associated, gamma adaptin ear containing, ARF binding protein 1
3162847IncompleteBC000538golgi associated, gamma adaptin ear containing, ARF binding protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001001560  NP_037497  NP_001001561  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001001560 NP_001001560   VHS
Alpha_adaptinC2
GAT
NM_001001561 NP_001001561   VHS
NM_001172687 NP_001166158    
NM_001172688 NP_001166159    
NM_013365 NP_037497 Q9UJY5 VHS
Alpha_adaptinC2
GAT

Related Sequences

 
mRNAGenPeptSwissProt
AF190862 AAF05707 Q9UJY5
AF233521 AAF35393 Q9UJY5
AF218584 AAF42847 Q9UJY5
BC000538 AAH00538 Q9UJY5
BC010917 AAH10917 Q9UJY5
BC029388 AAH29388 Q9UJY5
BC044629 AAH44629 Q9UJY5
AK075256 BAC11501 Q9UJY5
AK290548 BAF83237 Q9UJY5
AK095427 BAG53054 B3KTE2
AK122898 BAG53788 Q9UJY5
AL110219 CAB53679 Q9UJY5
CR456493 CAG30379 Q6IC75
CU013090 CAK54521  
CU013378 CAK54820  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GGA1 NP_001166158 M.musculus Gga1 106039 Gene Info NP_666041 92
R.norvegicus Gga1 300066   NP_001011994 91
A.gambiae AgaP_AGAP011568 1271190   XP_309939 36
D.melanogaster Gga 31902   NP_572571 32
S.cerevisiae GGA2 856508   NP_011976 28
N.crassa NCU11302 3876105   XP_959967 27
S.pombe SPBC25H2.16c 2540570   NP_596351 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)