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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TARBP1, TAR (HIV-1) RNA binding protein 1
Sequence ID:NM_005646
Entrez Gene ID:6894
Ensembl ID:ENSG00000059588

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q42.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 234527084 - 234543701

 Exon Info From UCSC:
NM_005646

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4721653IncompleteBC016023Tar (HIV-1) RNA binding protein 1
100061704BC156249TAR (HIV-1) RNA binding protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005637  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005646 NP_005637 Q13395 SpoU_methylase

Related Sequences

 
mRNAGenPeptSwissProt
U38847 AAC50379 Q13395
BC156249 AAI56250  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TARBP1 NP_005637 M.musculus Gm17296 212728 Gene Info NP_001153379 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)