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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CAPN9, Calpain 9
Sequence ID:NM_016452
NM_006615
Entrez Gene ID:10753
Ensembl ID:ENSG00000135773

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q42.11-q42.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 230883160 - 230937749

 Exon Info From UCSC:
NM_016452
NM_006615

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5173512Full LengthBC027993calpain 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057536  NP_006606  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006615 NP_006606 O14815 efhand
Peptidase_C2
Calpain_III
NM_016452 NP_057536   efhand
Peptidase_C2
Calpain_III

Related Sequences

 
mRNAGenPeptSwissProt
AF022799 AAB80762 O14815
BC027993 AAH27993 Q6PIV8
AB038463 BAA92137 O14815
AK313629 BAG36389 B2R942
AK298024 BAG60326 B4DNR4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CAPN9 NP_006606 M.musculus Capn9 73647 Gene Info NP_076198 86
R.norvegicus Capn9 116694   XP_341720 86
A.gambiae AgaP_AGAP012068 4577493   XP_001238322 49
D.melanogaster CalpA 37232   NP_477047 49
D.melanogaster CalpB 39165   NP_524016 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)