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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PTPRM, protein tyrosine phosphatase, receptor type, M
Sequence ID:NM_001105244
NM_002845
Entrez Gene ID:5797
Ensembl ID:ENSG00000173482

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 8406758 - 8406951

 Exon Info From UCSC:
NM_001105244
NM_002845

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5274244Full LengthBC051651protein tyrosine phosphatase, receptor type, M
8860327Full LengthBC151842protein tyrosine phosphatase, receptor type, M

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002836  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001105244 NP_001098714      
NM_002845 NP_002836 P28827 EC 3.1.3.48 fn3
ig
Y_phosphatase
MAM

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC040543 AAH40543 Q49AC9  
BC051651 AAH51651 Q86V60  
BC151842 AAI51843 A7MBN1  
AK294492 BAG57714 B4DGA3  
AK303652 BAG64655 B4E143  
X58288 CAA41226 P28827 EC 3.1.3.48

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTPRM NP_001098714 M.musculus Ptprm 19274 Gene Info NP_033010 98
R.norvegicus Ptprm 29616   NP_001162103 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)