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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC27A6, solute carrier family 27 (fatty acid transporter), member 6
Sequence ID:NM_001017372
NM_014031
Entrez Gene ID:28965
Ensembl ID:ENSG00000113396

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 128301677 - 128368989

 Exon Info From UCSC:
NM_001017372
NM_014031

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5301306Full LengthBC041945solute carrier family 27 (fatty acid transporter), member 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_054750  NP_001017372  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001017372 NP_001017372 Q9Y2P4 AMP-binding
NM_014031 NP_054750 Q9Y2P4 AMP-binding

Related Sequences

 
mRNAGenPeptSwissProt
AF064254 AAD29443 Q9Y2P4
BC041945 AAH41945 Q9Y2P4
AK313456 BAG36243 B2R8P6
BX537383 CAD97625 Q9Y2P4
CR457129 CAG33410 Q9Y2P4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC27A6 NP_054750 R.norvegicus Slc27a6 291582   NP_001099615 79
M.musculus Slc27a6 225579 Gene Info NP_001074541 78
N.crassa NCU06032 3875760   XP_959622 35
S.cerevisiae FAT1 852329   NP_009597 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)