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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CNPPD1, Cyclin Pas1/PHO80 domain containing 1
Sequence ID:NM_015680
Entrez Gene ID:27013
Ensembl ID:ENSG00000115649

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q35Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 220036618 - 220038188

NM_015680 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
281258220036619220037849
12591376220038071220038188
13771438220038867220038928
14391567220039499220039627
15681688220039709220039829
16891770220040312220040393
17711879220040944220041052
18802100220041481220041701

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2958621Full LengthBC012821chromosome 2 open reading frame 24
3051397Full LengthBC001393chromosome 2 open reading frame 24

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015680 NP_056495 Q9BV87  

Related Sequences

 
mRNAGenPeptSwissProt
AF070638 AAC25393 Q9BV87
AF151815 AAD34052 Q9BV87
AY007160 AAG02008 Q9BV87
BC001393 AAH01393 Q9BV87
BC012821 AAH12821 Q9BV87
HQ448256 ADQ32736  
AK314975 BAG37474 Q9BV87
AK075274 BAG52100 B3KQN8
CR457401 CAG33682 Q9BV87

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNPPD1 NP_056495 R.norvegicus Cnppd1 316530   NP_954543 85
M.musculus 1810031K17Rik 69171 Gene Info NP_081253 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)