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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. LAMP2, lysosomal-associated membrane protein 2
Sequence ID:NM_001122606
NM_002294
NM_013995
RefSeqGene ID:NG_007995
Entrez Gene ID:3920
Ensembl ID:ENSG00000005893

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
DANON DISEASE 

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 119564795 - 119568084

 Exon Info From UCSC:
NM_001122606
NM_002294
NM_013995

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3543019Full LengthBC002965lysosomal-associated membrane protein 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_054701  NP_002285  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001122606 NP_001116078    
NM_002294 NP_002285 P13473 Lamp
NM_013995 NP_054701   Lamp

Related Sequences

 
mRNAGenPeptSwissProt
J04183 AAA60383 P13473
U36336 AAA91149 P13473
S79873 AAB35426 P13473
BC002965 AAH02965 P13473
AY561849 AAS67876 P13473
DQ892095 ABM83021  
DQ895288 ABM86214  
AK291090 BAF83779 P13473
AK293931 BAG57310 B4DF49
AK304405 BAG65239 B4E2S7
AK295038 BAH11955 B7Z2R9
X77196 CAA54416 P13473

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LAMP2 NP_001116078 R.norvegicus Lamp2 24944   NP_058764 64
M.musculus Lamp2 16784 Gene Info NP_034815 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)