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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IGBP1, immunoglobulin (CD79A) binding protein 1
Sequence ID:NM_001551
RefSeqGene ID:NG_012084
Entrez Gene ID:3476
Ensembl ID:ENSG00000089289

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq13.1-q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 69353298 - 69386171

NM_001551 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1736935331769353389
744866935357269353984
4877806935437269354665
7819766936648269366677
97710566936861069368689
105711696937005969370171
117016586938568269386170

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2962967Full LengthBC004137immunoglobulin (CD79A) binding protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001542  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001551 NP_001542 P78318 TAP42

Related Sequences

 
mRNAGenPeptSwissProt
BC004137 AAH04137 P78318
BT006736 AAP35382 P78318
DQ892322 ABM83248  
DQ895524 ABM86450  
AK315660 BAG38026  
AK054596 BAG51396  
Y08915 CAA70119 P78318
CR456782 CAG33063 P78318

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IGBP1 NP_001542 R.norvegicus Igbp1 58845   NP_113812 81
M.musculus Igbp1 18518 Gene Info NP_032810 80
A.gambiae AgaP_AGAP008797 4577996   XP_001237618 37
D.melanogaster Tap42 326166   NP_723811 34
C.elegans ppfr-4 190617   NP_497591 33
A.thaliana TAP46 835379   NP_568783 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)