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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OTUD5, OTU domain containing 5
Sequence ID:NM_001136157
NM_001136158
NM_001136159
NM_017602
Entrez Gene ID:55593
Ensembl ID:ENSG00000068308

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 48779487 - 48792137

 Exon Info From UCSC:
NM_001136157
NM_001136158
NM_001136159
NM_017602

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2958229Full LengthBC009917OTU domain containing 5
4840926Full LengthBC098440OTU domain containing 5
5241560Full LengthBC028225OTU domain containing 5
4334567IncompleteBC011738OTU domain containing 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060072  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001136157 NP_001129629      
NM_001136158 NP_001129630      
NM_001136159 NP_001129631      
NM_017602 NP_060072 Q96G74 EC 3.4.19.12 OTU

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC009917 AAH09917 Q96G74 EC 3.4.19.12
BC028225 AAH28225 Q96G74 EC 3.4.19.12
BC098440 AAH98440 Q96G74 EC 3.4.19.12
AK022612 BAB14131 Q96G74 EC 3.4.19.12
AK026260 BAB15416 Q96G74 EC 3.4.19.12
AK294590 BAG57778 B4DGG7  
AL137509 CAB70778 Q96G74 EC 3.4.19.12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OTUD5 NP_060072 R.norvegicus Otud5 363452   NP_001032585 99
M.musculus Otud5 54644 Gene Info NP_613070 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)