Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PRRC2C, proline-rich coiled-coil 2C
Sequence ID:NM_015172
Entrez Gene ID:23215
Ensembl ID:ENSG00000117523

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 171509399 - 171562645

 Exon Info From UCSC:
NM_015172

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3460804IncompleteBC001260BAT2 domain containing 1
3926279IncompleteBC006090BAT2 domain containing 1
4794617IncompleteBC026108BAT2 domain containing 1
4998749IncompleteBC058930BAT2 domain containing 1
5260574IncompleteBC066968BAT2 domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055987  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015172 NP_055987 Q9Y520 BAT2_N

Related Sequences

 
mRNAGenPeptSwissProt
AF253978 AAG44627 Q9Y520
BC006090 AAH06090 Q9Y520
BC045713 AAH45713 Q9Y520
BC058930 AAH58930 Q9Y520
AF488829 AAO49478 Q9Y520
AB029019 BAA83048 Q9Y520
AK000190 BAA90997 Q9Y520
AK022492 BAB14056 Q9Y520
AK297263 BAG59739 B4DM27
AK298887 BAG61000 B4DQN8
AK304841 BAG65584 B4E3S2
AL096857 CAB51071 Q9Y520
AL133635 CAB63759 Q9Y520
AL162004 CAB82345 Q9Y520

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PRRC2C NP_055987 M.musculus Prrc2c 226562 Gene Info NP_001074759 87
R.norvegicus Prrc2c 360865   XP_341142 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)