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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. LAMP1, Lysosomal-associated membrane protein 1
Sequence ID:NM_005561
Entrez Gene ID:3916
Ensembl ID:ENSG00000185896

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 113951555 - 113977740

NM_005561 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1342113951468113951809
343464113960799113960920
465684113963957113964176
685843113965023113965181
8441031113973783113973970
10321157113974659113974784
11581224113975718113975784
12251395113975871113976041
13962540113976596113977740

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5019745Full LengthBC021288lysosomal-associated membrane protein 1
30390596Full LengthBC093044lysosomal-associated membrane protein 1
4100802IncompleteBC006345lysosomal-associated membrane protein 1
4128923IncompleteBC007845lysosomal-associated membrane protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005552  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005561 NP_005552 P11279 Lamp

Related Sequences

 
mRNAGenPeptSwissProt
J03263 AAA59524 P11279
J04182 AAA60382 P11279
BC006345 AAH06345 P11279
BC007845 AAH07845 P11279
BC021288 AAH21288 P11279
BC093044 AAH93044 P11279
DQ892614 ABM83540  
DQ895854 ABM86780  
AB209319 BAD92556 Q59FZ0
AK092398 BAG52545 B3KRY3
AK301584 BAG63075 B4DWL3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LAMP1 NP_005552 M.musculus Lamp1 16783 Gene Info NP_034814 69
R.norvegicus Lamp1 25328   NP_036989 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)