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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. REG1A, regenerating islet-derived 1 alpha
Sequence ID:NM_002909
RefSeqGene ID:NG_023271
Entrez Gene ID:5967
Ensembl ID:ENSG00000115386

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 79347939 - 79350388

NM_002909 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1577934758379347639
581677934794179348050
1682867934868779348805
2874247934911379349250
4255367934996679350077
5378107935027379350546

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3950349Full LengthBC005350regenerating islet-derived 1 alpha
40000024IncompleteBC110438regenerating islet-derived 1 alpha
40000028IncompleteBC118621regenerating islet-derived 1 alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002900  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002909 NP_002900 P05451 Lectin_C

Related Sequences

 
mRNAGenPeptSwissProt
M18963 AAA36558 P05451
M27190 AAA60546 P05451
AF172331 AAD51330 P05451
BC005350 AAH05350 P05451
BC110438 AAI10439 Q2TBE1
BC118621 AAI18622 Q2TBE1
D56494 BAA09543  
D56495 BAA09544  
AK291981 BAF84670 A8K7G6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens REG1A NP_002900 M.musculus Reg1 19692 Gene Info NP_033068 75
R.norvegicus Reg1a 24714   NP_036773 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)