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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CPSF1, cleavage and polyadenylation specific factor 1, 160kDa
Sequence ID:NM_013291
Entrez Gene ID:29894
Ensembl ID:ENSG00000071894

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q24.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 145618446 - 145619688

 Exon Info From UCSC:
NM_013291

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4300196Full LengthBC017232cleavage and polyadenylation specific factor 1, 160kDa
4130156IncompleteBC009954cleavage and polyadenylation specific factor 1, 160kDa
5211820IncompleteBC028197cleavage and polyadenylation specific factor 1, 160kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_037423  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013291 NP_037423 Q10570 CPSF_A

Related Sequences

 
mRNAGenPeptSwissProt
U37012 AAC50293 Q10570
BC017232 AAH17232 Q10570
DQ893479 ABM84405  
DQ896356 ABM87355  
AB046744 BAB21613 Q9C0J6
AK293601 BAG57065 B4DEF4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CPSF1 NP_037423 M.musculus Cpsf1 94230 Gene Info NP_444423 97
R.norvegicus Cpsf1 366952   NP_001124043 97
A.gambiae AgaP_AGAP011340 1270599   XP_309311 51
D.melanogaster Cpsf160 44250   NP_995833 48
A.thaliana CPSF160 835240   NP_199979 36
C.elegans cpsf-1 177003   NP_500157 35
N.crassa NCU02082 3880749   XP_964609 32
S.pombe cft1 2539694   NP_595441 28
S.cerevisiae CFT1 851895   NP_010587 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta