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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATF6, activating transcription factor 6
Sequence ID:NM_007348
RefSeqGene ID:NG_029773
Entrez Gene ID:22926
Ensembl ID:ENSG00000118217

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q22-q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 161736083 - 161928872

 Exon Info From UCSC:
NM_007348

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100066402Full LengthBC166676activating transcription factor 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031374  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007348 NP_031374 P18850 bZIP_1

Related Sequences

 
mRNAGenPeptSwissProt
AF005887 AAB64434 P18850
BC014969 AAH14969 P18850
BC071997 AAH71997 P18850
BC166676 AAI66676  
AB015856 BAA34722 P18850
AB208929 BAD92166 Q59H30
AK290498 BAF83187 A8K383

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATF6 NP_031374 R.norvegicus Atf6 304962   NP_001100666 88
M.musculus Atf6 226641 Gene Info NP_001074773 87
A.gambiae AgaP_AGAP008832 3291826   XP_552696 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)