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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNX16, sorting nexin 16
Sequence ID:NM_022133
NM_152836
NM_152837
Entrez Gene ID:64089
Ensembl ID:ENSG00000104497

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8q21.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 82712957 - 82752448

 Exon Info From UCSC:
NM_022133
NM_152836
NM_152837

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5224216Full LengthBC033630sorting nexin 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_071416  NP_690049  NP_690050  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022133 NP_071416 P57768 PX
NM_152836 NP_690049   PX
NM_152837 NP_690050   PX

Related Sequences

 
mRNAGenPeptSwissProt
AF305779 AAG25676 P57768
BC033630 AAH33630 P57768
HQ448008 ADQ32489  
AK290903 BAF83592 P57768
AL833763 CAH56235 P57768

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNX16 NP_071416 R.norvegicus Snx16 64088   NP_071625 85
M.musculus Snx16 74718 Gene Info NP_083344 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)