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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COPS5, COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)
Sequence ID:NM_006837
Entrez Gene ID:10987
Ensembl ID:ENSG00000121022

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 67955316 - 67973864

NM_006837 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
252596795531767955551
2604086795804667958194
4095206796346467963575
5216066796875367968838
6076726796961467969679
6738016797031767970445
80210366797144567971679
103715106797408867974561

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3161025Full LengthBC007272COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)
3354130Full LengthBC001187COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)
3530890Full LengthBC001859COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006828  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006837 NP_006828 Q92905 Mov34

Related Sequences

 
mRNAGenPeptSwissProt
U65928 AAB16847 Q92905
U70734 AAD03468 Q92905
BC001187 AAH01187 Q92905
BC001859 AAH01859 Q92905
BC007272 AAH07272 Q92905
JF432439 ADZ15656  
AB209134 BAD92371 Q59GH5
CR541678 CAG46479 Q92905
BX648542 CAH10375 Q92905

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COPS5 NP_006828 M.musculus Cops5 26754 Gene Info NP_038743 99
R.norvegicus Cops5 312916   NP_001020866 99
D.melanogaster CSN5 42000   NP_477442 76
A.gambiae AgaP_AGAP002880 1273087   XP_312032 73
A.thaliana CSN5A 838899   NP_173705 68
A.thaliana CSN5B 843463   NP_177279 68
C.elegans csn-5 177342   NP_500841 60
N.crassa NCU00467 3872933   XP_956786 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta