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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TCEA1, transcription elongation factor A (SII), 1
Sequence ID:NM_006756
NM_201437
Entrez Gene ID:6917
Ensembl ID:ENSG00000187735

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 54879947 - 54934819

 Exon Info From UCSC:
NM_006756
NM_201437

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6470030Full LengthBC072460transcription elongation factor A (SII), 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_958845  NP_006747  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006756 NP_006747 P23193 TFIIS_C
TFIIS_M
NM_201437 NP_958845   TFIIS_C
TFIIS_M

Related Sequences

 
mRNAGenPeptSwissProt
M81601 AAA61138 P23193
BC072460 AAH72460 P23193
BT019995 AAV38798 P23193
AK290454 BAF83143 P23193
AK297729 BAH12657 B7Z4S1
AK297957 BAH12696 B7Z4W0
X57198 CAA40484 P23193
X62585 CAA44470 P23193
CR542221 CAG47017 P23193

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TCEA1 NP_006747 M.musculus Tcea1 21399 Gene Info NP_035671 97
C.elegans T24H10.1 174450   NP_495941 50
S.pombe tfs1 2541941   NP_593623 38
S.cerevisiae DST1 852839   NP_011472 37
N.crassa NCU02563 3881812   XP_965694 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)