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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLTC, Clathrin, heavy chain (Hc)
Sequence ID:NM_004859
Entrez Gene ID:1213
Ensembl ID:ENSG00000141367

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q11-qterMitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 57760365 - 57772473

 Exon Info From UCSC:
NM_004859

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6045540Full LengthBC054489clathrin, heavy chain (Hc)
6187185Full LengthBC051800clathrin, heavy chain (Hc)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004850  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004859 NP_004850 Q00610 Clathrin
Clathrin_propel

Related Sequences

 
mRNAGenPeptSwissProt
BC036430 AAH36430 Q49AL0
BC051800 AAH51800 Q00610
BC054489 AAH54489 Q00610
D21260 BAA04801 Q00610
X55878 CAA39363 Q00610
BX640615 CAE45761 Q00610

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLTC NP_004850 M.musculus Cltc 67300 Gene Info NP_001003908 100
R.norvegicus Cltc 54241   NP_062172 100
A.gambiae AgaP_AGAP003021 1272931   XP_311856 81
D.melanogaster Chc 32537   NP_001096993 80
C.elegans chc-1 176434   NP_499260 72
A.thaliana AT3G11130 820284   NP_187724 57
A.thaliana AT3G08530 820001   NP_187466 57
N.crassa NCU02510 3881791   XP_965641 57
S.pombe chc1 2542078   NP_594148 56
S.cerevisiae CHC1 852666   NP_011309 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)