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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCM1, Pericentriolar material 1
Sequence ID:NM_006197
RefSeqGene ID:NG_027690
Entrez Gene ID:5108
Ensembl ID:ENSG00000078674

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
THYROID CARCINOMA, PAPILLARYCCDC6
GOLGA5
NCOA4
NCOA4
PRKAR1A
TRIM24
TRIM33

Cytogenetic Location (from UniGene)

Cytogenetic Location:8p22-p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 17822128 - 17885258

 Exon Info From UCSC:
NM_006197

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8381608Full LengthBC133052pericentriolar material 1
9056758Full LengthBC140946pericentriolar material 1
3905908IncompleteBC027477pericentriolar material 1
6046257IncompleteBC065022pericentriolar material 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006197 NP_006188 Q15154  

Related Sequences

 
mRNAGenPeptSwissProt
L27841 AAA60120 Q15154
AF068293 AAF65182 Q9P1R8
BC000453 AAH00453 Q15154
BC027477 AAH27477 Q15154
BC065022 AAH65022 Q15154
BC133052 AAI33053 A2RUU9
BC140946 AAI40947 B9EIS5
AK091406 BAC03656 Q15154
AK295856 BAG58662 B4DJ00
AK301727 BAG63193 B4DWY1
AK302378 BAG63697 A6NNN6
AX785390 CAE11958 Q15154

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCM1 NP_006188 M.musculus Pcm1 18536 Gene Info NP_076151 89
R.norvegicus Pcm1 81740   NP_112338 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)