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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CALD1, Caldesmon 1
Sequence ID:NM_033138
NM_033157
NM_004342
NM_033139
NM_033140
RefSeqGene ID:NG_029186
Entrez Gene ID:800
Ensembl ID:ENSG00000122786

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 134654717 - 134655390

 Exon Info From UCSC:
NM_033138
NM_033157
NM_004342
NM_033139
NM_033140

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4753285Full LengthBC040354caldesmon 1
3640699IncompleteBC005006caldesmon 1
4296901IncompleteBC015839caldesmon 1
4547970IncompleteBC014035caldesmon 1
5539489IncompleteBC061926caldesmon 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_149347  NP_004333  NP_149131  NP_149129  NP_149130  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004342 NP_004333   Caldesmon
NM_033138 NP_149129 Q05682 Caldesmon
NM_033139 NP_149130   Caldesmon
NM_033140 NP_149131   Caldesmon
NM_033157 NP_149347   Caldesmon

Related Sequences

 
mRNAGenPeptSwissProt
M64110 AAA35636 Q05682
M83216 AAA58419 Q05682
M83216 AAA58420 Q05682
AF247820 AAF69498 Q9NYG1
BC005006 AAH05006 Q05DR4
BC014035 AAH14035 Q6PJM5
BC040354 AAH40354 Q05682
BC061926 AAH61926 Q6P707
D90452 BAA14418 Q05682
D90453 BAA14419 Q05682
AB062484 BAB93509 Q8NI76
AK289686 BAF82375 Q05682
AK298524 BAG60727 B4DPW5
AK304729 BAG65492 B4E3I0
AK300282 BAH13250 B7Z6G4
BX538339 CAD98104 Q7Z2Y9
BX649088 CAI46261 Q5HY93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)