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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ARPC1B, actin related protein 2/3 complex, subunit 1B, 41kDa
Sequence ID:NM_005720
Entrez Gene ID:10095
Ensembl ID:ENSG00000130429

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 98972345 - 98992323

NM_005720 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1769897232898972403
771539898332498983400
1542589898430798984411
2594819898566198985883
4825899898752798987634
5907969898851598988721
7978729898880098988875
87310789899029398990498
107911699899165198991741
117014989899207398992401

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2821335Full LengthBC002988actin related protein 2/3 complex, subunit 1B, 41kDa
2967684Full LengthBC007555actin related protein 2/3 complex, subunit 1B, 41kDa
3138319Full LengthBC002562actin related protein 2/3 complex, subunit 1B, 41kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005711  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005720 NP_005711 O15143 WD40

Related Sequences

 
mRNAGenPeptSwissProt
AF006084 AAB64189 O15143
BC002562 AAH02562 O15143
BC002988 AAH02988 O15143
BC007555 AAH07555 O15143
DQ892169 ABM83095  
DQ895363 ABM86289  
AK314818 BAG37341 A4D275

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARPC1B NP_005711 M.musculus Arpc1b 11867 Gene Info NP_075631 97
R.norvegicus Arpc1b 54227   NP_062162 97
A.thaliana ARPC1B 817687   NP_180688 44
A.thaliana ARPC1A 817641   NP_001189645 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)