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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SHFM1, split hand/foot malformation (ectrodactyly) type 1
Sequence ID:NM_006304
RefSeqGene ID:NG_009273
Entrez Gene ID:7979
Ensembl ID:ENSG00000127922

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 96318080 - 96326684

NM_006304 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
142119631808096318277
2123059632410996324202
3065099633899996339202

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5166837Full LengthBC032782split hand/foot malformation (ectrodactyly) type 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006295  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006304 NP_006295 P60896
Q6IBB7
DSS1_SEM1

Related Sequences

 
mRNAGenPeptSwissProt
U41515 AAA91179 P60896
Q6IBB7
BC032782 AAH32782 P60896
Q6IBB7
AK291070 BAF83759 Q6IBB7
CR456887 CAG33168 P60896
Q6IBB7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SHFM1 NP_006295 M.musculus Shfm1 20422 Gene Info NP_033195 100
R.norvegicus Shfm1 680532   NP_001119562 100
A.gambiae AgaP_AGAP003851 1271588   XP_310410 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)