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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. H2AFV, H2A histone family, member V
Sequence ID:NM_138635
NM_012412
NM_201436
NM_201517
NM_201516
Entrez Gene ID:94239
Ensembl ID:ENSG00000105968

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 44873534 - 44887636

 Exon Info From UCSC:
NM_138635
NM_012412
NM_201436
NM_201517
NM_201516

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3505930Full LengthBC000098H2A histone family, member V
3615320Full LengthBC004274H2A histone family, member V
3907411Full LengthBC014885H2A histone family, member V
6458566Full LengthBC070169H2A histone family, member V

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036544  NP_958924  NP_958925  NP_619541  NP_958844  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_012412 NP_036544 Q71UI9 Histone
NM_138635 NP_619541   Histone
NM_201436 NP_958844   Histone
NM_201516 NP_958924   Histone
NM_201517 NP_958925   Histone

Related Sequences

 
mRNAGenPeptSwissProt
AF081192 AAC31938 Q71UI9
BC000098 AAH00098 Q71UI9
BC004274 AAH04274 Q71UI9
BC014885 AAH14885 Q71UI9
BC070169 AAH70169 Q71UI9
DQ892406 ABM83332  
DQ895618 ABM86544  
AB209001 BAD92238 Q71UI9
AK023973 BAG51243 Q71UI9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens H2AFV NP_036544 R.norvegicus RGD1560813 498894   XP_574181 99
A.gambiae AgaP_AGAP000306 1271957   XP_310818 98
D.melanogaster His2Av 43229   NP_524519 98
C.elegans htz-1 177212   NP_500569 89
A.thaliana HTA11 824621   NP_191019 84
A.thaliana HTA8 818463   NP_850299 84
P.falciparum PFC0920w 814523   XP_001351279 77
S.pombe pht1 2539668   NP_595630 74
S.cerevisiae HTZ1 854150   NP_014631 73
N.crassa NCU05347 3879503   XP_963338 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)