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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNX13, sorting nexin 13
Sequence ID:NM_015132
Entrez Gene ID:23161
Ensembl ID:ENSG00000071189

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7p21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 17833057 - 17861192

 Exon Info From UCSC:
NM_015132

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5298570Full LengthBC045667sorting nexin 13
4719518IncompleteBC022060sorting nexin 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055947  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015132 NP_055947   RGS
PX
PXA
Nexin_C

Related Sequences

 
mRNAGenPeptSwissProt
AF121862 AAD27835 Q9Y5W8
BC022060 AAH22060 Q9Y5W8
BC045667 AAH45667 Q86XC4
AF420470 AAL37728 Q9Y5W8
GQ129428 ACT64562  
GQ129429 ACT64563  
AB018256 BAA34433 Q9Y5W8
AK315135 BAG37586 Q9Y5W8
AK023740 BAG51222 B3KN60
AK294582 BAG57773 B4DGG2
AL353943 CAB89251 Q9NSH0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNX13 NP_055947 M.musculus Snx13 217463 Gene Info NP_001014973 97
R.norvegicus Snx13 362731   NP_001102178 85
C.elegans Y116A8C.26 178482   NP_503026 36
A.thaliana AT2G15900 816086   NP_179190 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)