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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SMPDL3A, sphingomyelin phosphodiesterase, acid-like 3A
Sequence ID:NM_006714
Entrez Gene ID:10924
Ensembl ID:ENSG00000172594

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q22.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 123110420 - 123130864

NM_006714 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1633123109970123110602
634847123116821123117034
848992123117968123118112
9931089123122454123122550
10901259123124808123124977
12601440123126053123126233
14411565123127377123127501
15662192123130235123130861

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3138813Full LengthBC018999sphingomyelin phosphodiesterase, acid-like 3A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006705  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006714 NP_006705 Q92484 Metallophos

Related Sequences

 
mRNAGenPeptSwissProt
BC018999 AAH18999 Q92484
DQ892207 ABM83133  
DQ895402 ABM86328  
AK301365 BAH13465 B7Z729
Y08136 CAA69330 Q92484

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMPDL3A NP_006705 M.musculus Smpdl3a 57319 Gene Info NP_065586 81
R.norvegicus Smpdl3a 294422   NP_001005539 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)