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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATG5, Autophagy related 5
Sequence ID:NM_004849
Entrez Gene ID:9474
Ensembl ID:ENSG00000057663

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 106634408 - 106764083

NM_004849 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
32200106632353106634550
22012318106649846106649963
23192413106696024106696118
24142576106727535106727697
25772655106740902106740980
26562783106756238106756365
27842949106763975106764140
29503244106773400106773694

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3609927Full LengthBC002699ATG5 autophagy related 5 homolog (S. cerevisiae)
30345897Full LengthBC093011ATG5 autophagy related 5 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004840  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004849 NP_004840 Q9H1Y0 APG5

Related Sequences

 
mRNAGenPeptSwissProt
AF293841 AAG44955 Q9H1Y0
BC002699 AAH02699 Q9H1Y0
BC093011 AAH93011 Q9H1Y0
EU283339 ABX79918 A9UGY9
HQ447996 ADQ32477  
AK001899 BAG50990 B3KMH8
AK299577 BAH13072 B7Z5Y6
Y11588 CAA72327 Q9H1Y0
BX537904 CAD97890 Q7Z3H3
CR749386 CAH18236 Q9H1Y0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATG5 NP_004840 M.musculus Atg5 11793 Gene Info NP_444299 97
A.gambiae AgaP_AGAP010939 1271014   XP_309756 53
D.melanogaster Atg5 31666   NP_572390 50
C.elegans atg-5 171735   NP_490885 36
A.thaliana APG5 831594   NP_197231 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)