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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. AKIRIN2, Akirin 2
Sequence ID:NM_018064
Entrez Gene ID:55122
Ensembl ID:ENSG00000135334

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q15Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 88387657 - 88411985

NM_018064 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
187648838457888385324
7658368838557788385648
8379868838753588387684
98711308839133788391480
113119488841116788411984

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820292Full LengthBC005051akirin 2
2822886Full LengthBC000764akirin 2
2822886Full LengthBC003042akirin 2

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018064 NP_060534 Q53H80  

Related Sequences

 
mRNAGenPeptSwissProt
BC000764 AAH00764 Q53H80
BC003042 AAH03042 Q53H80
BC005051 AAH05051 Q53H80
AK001204 BAA91551 Q9NW35
AK222701 BAD96421 Q53H80

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens AKIRIN2 NP_060534 M.musculus Akirin2 433693 Gene Info NP_001007590 95
R.norvegicus Akirin2 297968   NP_001035003 95
A.gambiae AgaP_AGAP006809 1270257   XP_308938 47
D.melanogaster akirin 38821   NP_001189058 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)