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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SMAP1, small ArfGAP 1
Sequence ID:NM_001044305
NM_021940
Entrez Gene ID:60682
Ensembl ID:ENSG00000112305

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 71377575 - 71571716

 Exon Info From UCSC:
NM_001044305
NM_021940

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5215869Full LengthBC028074small ArfGAP 1
5313112Full LengthBC036123small ArfGAP 1
3856134IncompleteBC008672small ArfGAP 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_068759  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001044305 NP_001037770 Q8IYB5  
NM_021940 NP_068759   ArfGap

Related Sequences

 
mRNAGenPeptSwissProt
BC008672 AAH08672 Q8IYB5
BC028074 AAH28074 Q8IYB5
BC036123 AAH36123 Q8IYB5
AY055003 AAL14714 Q8IYB5
AY055004 AAL14715 Q8IYB5
AF442495 AAP97320 Q8IYB5
AK023221 BAB14473 Q8IYB5
AK222711 BAD96431 Q8IYB5
AK290448 BAF83137 A8K333
AK315579 BAG37952 B2RDK5
AK303387 BAG64443 B4E0I1
AL833906 CAD38762 Q8IYB5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMAP1 NP_001037770 M.musculus Smap1 98366 Gene Info NP_082810 93
A.thaliana AGD5 835519   NP_568807 53
A.gambiae AgaP_AGAP012088 1280585   XP_320438 41
C.elegans W09D10.1 176499   NP_499364 41
D.melanogaster CG8243 35890   NP_610424 39
A.gambiae AgaP_AGAP012887 4397895   XP_001230274 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)