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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PSMA5, proteasome (prosome, macropain) subunit, alpha type, 5
Sequence ID:NM_001199772
NM_001199773
NM_001199774
NM_002790
Entrez Gene ID:5686
Ensembl ID:ENSG00000143106

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 109941663 - 109943691

Transcript StartTranscript EndChromosomal Start Chromosomal End
56290109944477109944711
291377109952549109952635
378480109953632109953734
481539109954498109954556
540647109954698109954805
648715109955689109955756
716842109957858109957984
843909109964481109964547
9101023109968923109969036

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6013212Full LengthBC103751proteasome (prosome, macropain) subunit, alpha type, 5
40030391Full LengthBC102018proteasome (prosome, macropain) subunit, alpha type, 5
40030392Full LengthBC102019proteasome (prosome, macropain) subunit, alpha type, 5
40030394Full LengthBC102020proteasome (prosome, macropain) subunit, alpha type, 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002781  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001199772 NP_001186701      
NM_001199773 NP_001186702      
NM_001199774 NP_001186703      
NM_002790 NP_002781 P28066 EC 3.4.25.1 Proteasome

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC102018 AAI02019 P28066 EC 3.4.25.1
BC102019 AAI02020 P28066 EC 3.4.25.1
BC102020 AAI02021 P28066 EC 3.4.25.1
BC103751 AAI03752 P28066 EC 3.4.25.1
BT019717 AAV38522 Q5U0A0  
AK313351 BAG36153 P28066 EC 3.4.25.1
AK304448 BAG65266 B4E2V4  
X61970 CAA43962 P28066 EC 3.4.25.1
CR456847 CAG33128 P28066 EC 3.4.25.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMA5 NP_002781 M.musculus Psma5 26442 Gene Info NP_036097 100
R.norvegicus Psma5 29672   NP_058978 99
D.melanogaster Prosalpha5 36951   NP_477202 71
A.thaliana PAE1 841822   NP_001077717 70
A.thaliana PAE2 820649   NP_188046 70
A.gambiae AgaP_AGAP008816 1275676   XP_314945 69
N.crassa NCU05295 3878214   XP_962066 65
S.pombe pup2 2543205   NP_594372 63
C.elegans pas-5 172942   NP_492765 63
S.cerevisiae PUP2 853168   NP_011769 61
P.falciparum PF07_0112 2655165   XP_001349171 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)