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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SORT1, sortilin 1
Sequence ID:NM_001205228
NM_002959
RefSeqGene ID:NG_028280
Entrez Gene ID:6272
Ensembl ID:ENSG00000134243

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p13.3|1p21.3-p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 109852191 - 109855016


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4123836Full LengthBC023542sortilin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002950  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001205228 NP_001192157    
NM_002959 NP_002950 Q99523 BNR

Related Sequences

 
mRNAGenPeptSwissProt
BC023542 AAH23542 Q99523
DQ896793 ABM87792  
AK293118 BAF85807 A8KAQ3
AK301548 BAG63045 B4DWI3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SORT1 NP_002950 M.musculus Sort1 20661 Gene Info NP_064356 92
R.norvegicus Sort1 83576   NP_113955 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)