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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SPDEF, SAM pointed domain containing ets transcription factor
Sequence ID:NM_001252294
NM_012391
Entrez Gene ID:25803
Ensembl ID:ENSG00000124664

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 34505578 - 34524084

Transcript StartTranscript EndChromosomal Start Chromosomal End
16503450557934506228
6517973450702634507172
7988453450729134507338
84610433450876034508957
104415083451179634512260
150918943452370534524090

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4546860Full LengthBC021299SAM pointed domain containing ets transcription factor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036523  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001252294 NP_001239223    
NM_012391 NP_036523 O95238 Ets
SAM_PNT

Related Sequences

 
mRNAGenPeptSwissProt
AF071538 AAC95296 O95238
BC021299 AAH21299 O95238
EU446697 ABZ92226  
EU832757 ACE87089  
EU832677 ACE87768  
AB031549 BAA89543 O95238
AK301543 BAG63040 B4DWH8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPDEF NP_036523 R.norvegicus Spdef 689210   NP_001103000 90
M.musculus Spdef 30051 Gene Info NP_038919 88
D.melanogaster Ets98B 43334   NP_524535 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)