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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HLA-DPB1, major histocompatibility complex, class II, DP beta 1
Sequence ID:NM_002121
Entrez Gene ID:3115
Ensembl ID:ENSG00000223865

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 33043786 - 33054544

NM_002121 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11593304375933043917
1604233304844833048711
4247053305272633053007
7068163305355533053665
8178403305399533054018
84115013305431533054975

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4309717Full LengthBC007963major histocompatibility complex, class II, DP beta 1
4341117Full LengthBC013184major histocompatibility complex, class II, DP beta 1
4851472Full LengthBC015000major histocompatibility complex, class II, DP beta 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002112  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002121 NP_002112 P04440 MHC_II_beta
C1-set
NM_002125 NP_002116 Q30154 MHC_II_beta
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
J03041 AAA35993 P04440
M16954 AAA36276 Q30154
M16955 AAA36277 Q30154
M16956 AAA36278 Q29789
M17383 AAA36294 Q30147
L29173 AAA36311 Q29670
K00409 AAA36312 P04440
K01615 AAA36313 P04440
M28200 AAA53195 Q30059
M28201 AAA53196 Q30060
M28202 AAA53197 P04440
M15992 AAA59678 Q29972
M16086 AAA59679 Q29973
M30182 AAA59715 Q30009
M21886 AAA59739 Q30030
M32578 AAA59795 Q30109
M17379 AAA59803 Q30143
M17377 AAA59818 Q30154
M17382 AAA59819 Q30151
M20429 AAA59822 Q30154
M20503 AAA59826 Q30158
M27689 AAA59829 Q30162
M83664 AAA59837 P04440
M30181 AAA59840 Q30178
M57648 AAA63218 Q29971
M57466 AAA63221 Q30058
M59798 AAA64236 Q30114
S66883 AAB28826 Q30212
AF004817 AAB61608 O02951
U31770 AAB63983 Q30154
U17381 AAC50167 Q5Y7A7
U95818 AAD00818 Q9TQD8
S79786 AAD14315 Q29754
U66826 AAD43829 Q9TQE0
BC007963 AAH07963 P04440
BC009234 AAH09234 Q30154
BC013184 AAH13184 P04440
BC015000 AAH15000 Q95HA4
AF490771 AAO85467 Q860Y4
BT019780 AAV38583 P04440
AY656678 AAV71025 P04440
AY656679 AAV71026 P04440
AY656680 AAV71027 P04440
AY804132 AAW78737 P04440
AY804133 AAW78738 P04440
AY804134 AAW78739 Q5EP54
AY804135 AAW78740 P04440
AY804136 AAW78741 P04440
AY804137 AAW78742 P04440
AY804138 AAW78743 P04440
AY804139 AAW78744 P04440
AY804140 AAW78745 Q5EP48
AY804141 AAW78746 P04440
AY804142 AAW78747 P04440
AY804143 AAW78748 P04440
AY831401 AAW80919 P04440
AY831402 AAW80920 P04440
AY831403 AAW80921 P04440
AY831404 AAW80922 P04440
DQ284441 ABC66207 Q5EP54
DQ891050 ABM81976  
DQ894229 ABM85155  
GQ891549 ACX50636 D0EV54
HQ447115 ADQ31602  
AB062112 BAB84521 Q9GIY3
AB208978 BAD92215 Q59GY1
AK291986 BAF84675 A8K7H1
AK292140 BAF84829 Q0R326
AK313305 BAG36110 P04440
AK314834 BAG37353 Q30154
AK301322 BAG62871 B4DW09
AK303153 BAG64256 B4DZZ4
X00532 CAA25210 Q14465
X01426 CAA25672 Q5EP54
P04440
X03067 CAA26871 Q5EP54
P04440
X99895 CAA68170 Q95462
AJ297582 CAC08822 Q9GIY3
AJ580838 CAE45568 Q70I25
HE614584 CCE73901 I4EC15
HE614586 CCE73903 I4EC17

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)