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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL17, ribosomal protein L17
Sequence ID:NM_000985
NM_001035006
NM_001199340
NM_001199341
NM_001199342
NM_001199343
NM_001199344
NM_001199345
Entrez Gene ID:6139
Ensembl ID:ENSG00000215472

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 47014855 - 47017947

 Exon Info From UCSC:
NM_000985
NM_001035006

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2821464Full LengthBC000502ribosomal protein L17
4251433Full LengthBC017831ribosomal protein L17
4540700Full LengthBC106031ribosomal protein L17
4797583Full LengthBC066323ribosomal protein L17
4799029Full LengthBC066324ribosomal protein L17

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000985 NP_000976 P18621 Ribosomal_L22
NM_001035006 NP_001030178 P18621  
NM_001199340 NP_001186269    
NM_001199341 NP_001186270    
NM_001199342 NP_001186271    
NM_001199343 NP_001186272    
NM_001199344 NP_001186273    
NM_001199345 NP_001186274    

Related Sequences

 
mRNAGenPeptSwissProt
BC000502 AAH00502 P18621
BC017831 AAH17831 P18621
BC066323 AAH66323 P18621
BC066324 AAH66324 P18621
BC106031 AAI06032 P18621
DQ892202 ABM83128  
DQ895398 ABM86324  
AK311828 BAG34770 P18621
AK304659 BAG65434 B4E3C2
X53777 CAA37793 P18621

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL17 NP_000976 M.musculus Rpl17 319195 Gene Info NP_001002239 99
R.norvegicus RGD1562905 292539   XP_214799 97
A.gambiae RL17_ANOGA 1281716   XP_551371 73
D.melanogaster RpL17 31613   NP_572346 70
A.thaliana AT1G67430 843063   NP_176910 67
A.thaliana AT1G27400 839630   NP_174060 67
C.elegans rpl-17 171692   NP_740781 64
N.crassa NCU03703 3877643   XP_961479 61
S.pombe rpl1702 2539013   NP_587841 57
S.pombe rpl1701 2540358   NP_595711 57
P.falciparum PF13_0268 814233   XP_001350227 54
S.cerevisiae RPL17A 853674   NP_012741 54
S.cerevisiae RPL17B 853262   NP_012358 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)