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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CCHCR1, coiled-coil alpha-helical rod protein 1
Sequence ID:NM_001105563
NM_001105564
NM_019052
Entrez Gene ID:54535
Ensembl ID:ENSG00000204536

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 31110215 - 31124679

 Exon Info From UCSC:
NM_001105563
NM_001105564
NM_019052

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40035162Full LengthBC110534coiled-coil alpha-helical rod protein 1
40035164Full LengthBC110535coiled-coil alpha-helical rod protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061925  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001105563 NP_001099033    
NM_001105564 NP_001099034    
NM_019052 NP_061925 Q769H0
Q8TD31
HCR

Related Sequences

 
mRNAGenPeptSwissProt
AF216493 AAF74221 Q8TD31
BC110534 AAI10535 Q2TB68
BC110535 AAI10536 Q8TD31
AY029160 AAK55759 Q8TD31
AB029331 BAA81890 Q8TD31
AK000204 BAA91007 Q769H0
Q8TD31
AK000217 BAA91016 Q8TD31
AK000533 BAA91236 Q8TD31
AB112474 BAD05130 Q769H0
AB112475 BAD05131 Q769H0
AK289446 BAF82135 A8K081
AK295494 BAG58414 B4DIA2
CR457227 CAG33508 Q6IAC8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCHCR1 NP_001099034 M.musculus Cchcr1 240084 Gene Info NP_666360 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)