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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. DDX41, DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
Sequence ID:NM_016222
Entrez Gene ID:51428
Ensembl ID:ENSG00000183258

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q35.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 176938577 - 176943947

 Exon Info From UCSC:
NM_016222

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3917178Full LengthBC015476DEAD (Asp-Glu-Ala-Asp) box polypeptide 41

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057306  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_016222 NP_057306 Q9UJV9 EC 3.6.4.13 DEAD
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF195417 AAF04150 Q9UJV9 EC 3.6.4.13
BC015476 AAH15476 Q9UJV9 EC 3.6.4.13
JF432312 ADZ15529    
AK001255 BAA91585 Q9UJV9 EC 3.6.4.13
AK027768 BAB55355 Q9UJV9 EC 3.6.4.13
AK222598 BAD96318 Q53HI2  
AK315491 BAG37875 Q9UJV9 EC 3.6.4.13
AK091774 BAG52414 B3KRK2  
AL137455 CAB70746 Q9UJV9 EC 3.6.4.13
BX641072 CAE46035 Q9UJV9 EC 3.6.4.13

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DDX41 NP_057306 M.musculus Ddx41 72935 Gene Info NP_598820 99
R.norvegicus Ddx41 314336   NP_001101516 99
A.gambiae AgaP_AGAP004711 1278516   XP_318117 69
D.melanogaster abs 40530   NP_524220 67
A.thaliana AT4G33370 829474   NP_195063 65
A.thaliana AT5G51280 835202   NP_199941 63
P.falciparum PFE1390w 813092   XP_001351833 56
C.elegans helicase 172413   NP_491962 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)