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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PFDN1, prefoldin subunit 1
Sequence ID:NM_002622
Entrez Gene ID:5201
Ensembl ID:ENSG00000113068

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 139624646 - 139626742

NM_002622 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11008139624634139625641
10091093139661033139661117
10941260139680000139680166
12611324139682625139682688

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2959698Full LengthBC003620prefoldin subunit 1
2959725Full LengthBC006202prefoldin subunit 1
2959726Full LengthBC011869prefoldin subunit 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002613  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002622 NP_002613 O60925 KE2

Related Sequences

 
mRNAGenPeptSwissProt
BC003620 AAH03620 O60925
BC006202 AAH06202 O60925
BC011869 AAH11869 O60925
AK223394 BAD97114 O60925
AK315353 BAG37749 O60925
Y17392 CAA76759 O60925

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PFDN1 NP_002613 M.musculus Pfdn1 67199 Gene Info NP_080303 98
R.norvegicus Pfdn1 361310   NP_001101897 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)