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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KDM3B, lysine (K)-specific demethylase 3B
Sequence ID:NM_016604
Entrez Gene ID:51780
Ensembl ID:ENSG00000120733

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 137688404 - 137772716

 Exon Info From UCSC:
NM_016604

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9007251Full LengthBC146788jumonji domain containing 1B
3162773IncompleteBC000539jumonji domain containing 1B
4524353IncompleteBC073869jumonji domain containing 1B
40072214IncompleteBC117693jumonji domain containing 1B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057688  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016604 NP_057688 Q7LBC6 JmjC

Related Sequences

 
mRNAGenPeptSwissProt
AF251039 AAF63765 Q7LBC6
BC000539 AAH00539 Q7LBC6
BC001202 AAH01202 Q7LBC6
BC117693 AAI17694 A4FUT8
BC146788 AAI46789 Q7LBC6
AF338242 AAK13499 Q7LBC6
AB029005 BAA83034 Q7LBC6
AK304371 BAG65210 B4E2P8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KDM3B NP_057688 M.musculus Kdm3b 277250 Gene Info NP_001074725 94
A.gambiae AgaP_AGAP002682 1273280   XP_312242 52
D.melanogaster CG8165 41143   NP_788611 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)