Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CNN3, calponin 3, acidic
Sequence ID:NM_001839
Entrez Gene ID:1266
Ensembl ID:ENSG00000117519

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p22-p21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 95362800 - 95391325

NM_001839 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1911499536250895363638
115012969536492695365072
129714139536722495367340
141415519536767695367813
155216189536867795368743
161917409536895895369079
174120829539239395392734

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3505668Full LengthBC025372calponin 3, acidic

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001830  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001839 NP_001830 Q15417 CH
Calponin

Related Sequences

 
mRNAGenPeptSwissProt
S80562 AAB35752 Q15417
BC025372 AAH25372 Q15417
DQ893013 ABM83939  
DQ896258 ABM87257  
AK312370 BAG35288 Q15417
AK294141 BAG57467 B4DFK6
AK298145 BAG60421 B4DP09
AK316398 BAH14769 B4DFK6
CR541848 CAG46646 Q15417

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNN3 NP_001830 M.musculus Cnn3 71994 Gene Info NP_082320 98
R.norvegicus Cnn3 54321   NP_062232 98
A.gambiae AgaP_AGAP012304 1280390   XP_320237 41
D.melanogaster Mp20 36468   NP_001014522 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)