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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAPGEF6, Rap guanine nucleotide exchange factor (GEF) 6
Sequence ID:NM_001164386
NM_001164387
NM_001164388
NM_001164389
NM_001164390
NM_016340
Entrez Gene ID:51735
Ensembl ID:ENSG00000158987

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 130759613 - 130760175

 Exon Info From UCSC:
NM_001164386
NM_001164387
NM_001164388
NM_001164389
NM_001164390
NM_016340

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860383Full LengthBC142964Rap guanine nucleotide exchange factor (GEF) 6
9021688Full LengthBC140820Rap guanine nucleotide exchange factor (GEF) 6
9053158Full LengthBC144627Rap guanine nucleotide exchange factor (GEF) 6
40124898Full LengthBC133703Rap guanine nucleotide exchange factor (GEF) 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057424  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164386 NP_001157858    
NM_001164387 NP_001157859    
NM_001164388 NP_001157860    
NM_001164389 NP_001157861    
NM_001164390 NP_001157862    
NM_016340 NP_057424 Q8TEU7 cNMP_binding
PDZ
RasGEF
RasGEF_N
RA

Related Sequences

 
mRNAGenPeptSwissProt
BC133703 AAI33704 Q8TEU7
BC140820 AAI40821 B2RTU6
BC142964 AAI42965 A5PLL6
BC144627 AAI44628 Q8TEU7
AF394782 AAK83368 Q8TEU7
AF478468 AAL79915 Q8TEU7
AF478469 AAL79916 Q8TEU7
AF478567 AAM21637 Q8TEU7
AK074318 BAB85049 Q8TEA3
AK302640 BAH13767 B7Z7Y1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAPGEF6 NP_001157858 M.musculus Rapgef6 192786 Gene Info NP_780467 92
R.norvegicus Rapgef6 303141   NP_001100473 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)