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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PRRC1, Proline-rich coiled-coil 1
Sequence ID:NM_130809
Entrez Gene ID:133619
Ensembl ID:ENSG00000164244

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q23.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 126853347 - 126887998

NM_130809 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1160126853308126853467
161283126859151126859273
284673126860222126860611
674834126862309126862469
835937126865985126866087
9381101126869314126869477
11021205126874731126874834
12061308126883510126883612
13094688126887398126890777

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3913311Full LengthBC017066proline-rich coiled-coil 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_130809 NP_570721 Q96M27  

Related Sequences

 
mRNAGenPeptSwissProt
BC017066 AAH17066 Q96M27
EU832004 ACE86667  
EU831910 ACE87351  
JF432183 ADZ15400  
AK057437 BAB71487 Q96M27
AK090486 BAC03467 Q96M27
AJ427339 CAD22113 Q96M27
AJ441110 CAD29585 Q96M27
AL831963 CAD38605 Q96M27
AJ496322 CAD42881 Q96M27
AJ515428 CAD56438 Q96M27
AJ515429 CAD56439 Q96M27
AJ515158 CAD56470 Q96M27
AL832600 CAH10384 Q96M27

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PRRC1 NP_570721 M.musculus Prrc1 73137 Gene Info NP_082723 88
R.norvegicus Prrc1 291444   NP_001029059 87
A.gambiae AgaP_AGAP009254 5668080   XP_001689229 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)