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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PJA2, praja ring finger 2, E3 ubiquitin protein ligase
Sequence ID:NM_014819
Entrez Gene ID:9867
Ensembl ID:ENSG00000198961

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 108670410 - 108745572

NM_014819 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
112657108670410108673056
26582779108679890108680011
27802894108680405108680519
28953006108691615108691726
30073189108698540108698722
31903375108704261108704446
33764426108713904108714954
44274627108717203108717403
46284745108719103108719220
47464878108745542108745674

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4811738Full LengthBC030826praja ring finger 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055634  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014819 NP_055634 O43164 zf-C3HC4

Related Sequences

 
mRNAGenPeptSwissProt
BC030826 AAH30826 O43164
AB007898 BAA23710 O43164
AK291759 BAF84448 O43164
CR749579 CAH18371 O43164

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PJA2 NP_055634 M.musculus Pja2 224938 Gene Info NP_001020480 84
R.norvegicus Pja2 192256   NP_620251 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)