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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC1A3, solute carrier family 1 (glial high affinity glutamate transporter), member 3
Sequence ID:NM_001166695
NM_001166696
NM_004172
RefSeqGene ID:NG_015890
Entrez Gene ID:6507
Ensembl ID:ENSG00000079215

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
EPISODIC ATAXIA, TYPE 6 

Cytogenetic Location (from UniGene)

Cytogenetic Location:5p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 36686601 - 36688436

 Exon Info From UCSC:
NM_001166695
NM_001166696
NM_004172

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5264000Full LengthBC037310solute carrier family 1 (glial high affinity glutamate transporter), member 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004163  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001166695 NP_001160167    
NM_001166696 NP_001160168    
NM_004172 NP_004163 Q8N169
P43003
SDF

Related Sequences

 
mRNAGenPeptSwissProt
U03504 AAA50428 P43003
BC037310 AAH37310 Q8N169
BC054475 AAH54475 Q7Z5T0
AY954110 AAY28724 P43003
D26443 BAA05462 P43003
AK312304 BAG35230 P43003
AK293886 BAG57275 B4DF14
AK295032 BAG58087 B4DHC6
AK295754 BAG58584 B4DIS2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC1A3 NP_004163 R.norvegicus Slc1a3 29483   NP_062098 97
M.musculus Slc1a3 20512 Gene Info NP_683740 97
C.elegans glt-5 174530   NP_496094 52
A.gambiae AgaP_AGAP009443 1269241   XP_560420 49
D.melanogaster Eaat1 34251   NP_001188751 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta