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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNAI1, snail homolog 1 (Drosophila)
Sequence ID:NM_005985
Entrez Gene ID:6615
Ensembl ID:ENSG00000124216

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 48599536 - 48605420

NM_005985 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11664859951248599677
1676944860036048600887
69517044860440848605417

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4537122Full LengthBC012910snail homolog 1 (Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005976  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005985 NP_005976 O95863 zf-C2H2

Related Sequences

 
mRNAGenPeptSwissProt
AF125377 AAD17332 O95863
AF131208 AAF32527 O95863
BC012910 AAH12910 O95863
DQ891599 ABM82525  
DQ894793 ABM85719  
AK313228 BAG36039 B2R842

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNAI1 NP_005976 R.norvegicus Snai1 116490   NP_446257 89
M.musculus Snai1 20613 Gene Info NP_035557 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta