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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SRSF11, serine/arginine-rich splicing factor 11
Sequence ID:NM_001190987
NM_004768
Entrez Gene ID:9295
Ensembl ID:ENSG00000116754

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 70716597 - 70717684

 Exon Info From UCSC:
NM_001190987
NM_004768

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5518580Full LengthBC040436splicing factor, arginine/serine-rich 11
3615263IncompleteBC002784splicing factor, arginine/serine-rich 11
3845506IncompleteBC009840splicing factor, arginine/serine-rich 11
4639478IncompleteBC022815splicing factor, arginine/serine-rich 11
5092873IncompleteBC017359splicing factor, arginine/serine-rich 11
5532638IncompleteBC032727splicing factor, arginine/serine-rich 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004759  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001190987 NP_001177916    
NM_004768 NP_004759 Q05519 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
M74002 AAA35554 Q05519
BC002784 AAH02784 Q6PKC9
BC009840 AAH09840 Q6PJY9
BC017359 AAH17359 Q6PJB9
BC032727 AAH32727 Q05BU6
BC040436 AAH40436 Q05519
AB062486 BAB93511 Q8NI74
AK300147 BAG61933 B4DTC1
AK301670 BAG63143 B4DWT1
BX640645 CAE45791 Q6N079
BX641004 CAE46007 Q6MZM2
BX537679 CAI46272 Q5HYN2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SRSF11 NP_001177916 R.norvegicus Srsf11 502603   NP_001030332 96
M.musculus Srsf11 69207 Gene Info NP_001087221 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)