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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RBPJ, recombination signal binding protein for immunoglobulin kappa J region
Sequence ID:NM_005349
RefSeqGene ID:NG_030343
Entrez Gene ID:3516
Ensembl ID:ENSG00000168214

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4p15.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 26434614 - 26434872

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4718839Full LengthBC020780recombination signal binding protein for immunoglobulin kappa J region
6152924Full LengthBC064976recombination signal binding protein for immunoglobulin kappa J region

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005340  NP_976029  NP_056958  NP_976028  

Protein Infomation

NM_005349 NP_005340 Q06330 TIG
NM_015874 NP_056958   TIG
NM_203283 NP_976028   TIG
NM_203284 NP_976029   TIG

Related Sequences

L07874 AAA16253 Q06330
L07875 AAA16254 Q06330
L07876 AAA16356 Q06330
L07872 AAA60258 Q06330
BC020780 AAH20780 Q06330
BC064976 AAH64976 Q06330
EU446485 ABZ92014  
EU832795 ACE87806  
GQ129335 ACT64469  
D14041 BAA21773 Q14663
AK302230 BAG63584 Q06330
AK303244 BAH13924 B7Z8D8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens RBPJ NP_005340 M.musculus Rbpj 19664 Gene Info NP_033061 98
R.norvegicus Rbpsuh 297767   XP_232595 95
A.gambiae AgaP_AGAP008935 1279906   XP_319690 80
D.melanogaster Su(H) 34881   NP_476868 78
C.elegans lag-1 177373   NP_741410 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta