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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. FXR1, fragile X mental retardation, autosomal homolog 1
Sequence ID:NM_001013438
NM_005087
NM_001013439
Entrez Gene ID:8087
Ensembl ID:ENSG00000114416

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q28Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 180699980 - 180700537

 Exon Info From UCSC:
NM_001013438
NM_005087
NM_001013439

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5122574Full LengthBC028983fragile X mental retardation, autosomal homolog 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001013457  NP_005078  NP_001013456  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001013438 NP_001013456   KH_1
Agenet
NM_001013439 NP_001013457   KH_1
NM_005087 NP_005078 P51114 KH_1
Agenet

Related Sequences

 
mRNAGenPeptSwissProt
U25165 AAC50155 P51114
BC028983 AAH28983 P51114
AY341428 AAQ20045 P51114
AK292633 BAF85322 P51114
AK294603 BAG57790 B4DGH9
AK297254 BAG59733 B4DM21
AK297331 BAG59790 B4DM78
AK302197 BAG63558 B4DXZ6
X90874 CAA62382 Q14341
AM393057 CAL37935  
AM393164 CAL38042  
AM393496 CAL38373  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens FXR1 NP_005078 R.norvegicus Fxr1 361927   NP_001012179 99
M.musculus Fxr1 14359 Gene Info NP_001106659 98
D.melanogaster Fmr1 37528   NP_611645 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)