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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IFT80, intraflagellar transport 80 homolog (Chlamydomonas)
Sequence ID:NM_001190241
NM_001190242
NM_020800
RefSeqGene ID:NG_022932
Entrez Gene ID:57560
Ensembl ID:ENSG00000068885

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
ASPHYXIATING THORACIC DYSTROPHY 2 

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q25.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 159974779 - 160101444

 Exon Info From UCSC:
NM_001190241
NM_001190242
NM_020800

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8069000Full LengthBC101494intraflagellar transport 80 homolog (Chlamydomonas)
8322721Full LengthBC113669intraflagellar transport 80 homolog (Chlamydomonas)
5312709IncompleteBC042027intraflagellar transport 80 homolog (Chlamydomonas)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065851  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001190241 NP_001177170    
NM_001190242 NP_001177171    
NM_020800 NP_065851 Q9P2H3 WD40

Related Sequences

 
mRNAGenPeptSwissProt
BC042027 AAH42027 Q9P2H3
BC101494 AAI01495 Q9P2H3
BC113669 AAI13670 Q9P2H3
HQ258513 ADR83267  
AB037795 BAA92612 Q9P2H3
AK303410 BAG64463 Q9P2H3
AL133045 CAB61372 Q9P2H3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IFT80 NP_065851 M.musculus Ift80 68259 Gene Info NP_080917 95
R.norvegicus Ift80 295106   NP_001013933 94
C.elegans che-2 180401   NP_508106 41
A.gambiae AgaP_AGAP010190 1279610   XP_319368 38
D.melanogaster Oseg5 35349   NP_610064 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)