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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GYG1, glycogenin 1
Sequence ID:NM_001184720
NM_001184721
NM_004130
RefSeqGene ID:NG_027677
Entrez Gene ID:2992
Ensembl ID:ENSG00000163754

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q24-q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 148709374 - 148745419

 Exon Info From UCSC:
NM_001184720
NM_001184721
NM_004130

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3504538Full LengthBC000033glycogenin 1
5287478IncompleteBC031096glycogenin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004121  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001184720 NP_001171649      
NM_001184721 NP_001171650      
NM_004130 NP_004121 P46976 EC 2.4.1.186 Glyco_transf_8

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U44131 AAB00114 P46976 EC 2.4.1.186
U31525 AAB09752 P46976 EC 2.4.1.186
AF087942 AAD52093 P46976 EC 2.4.1.186
BC000033 AAH00033 P46976 EC 2.4.1.186
BC031096 AAH31096 Q8N5Y3  
AK312283 BAG35212 B2R5R5  
AK299962 BAG61788 B4DSX6  
X79537 CAA56073 P46976 EC 2.4.1.186
CR536547 CAG38784 P46976 EC 2.4.1.186

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GYG1 NP_004121 R.norvegicus Gyg1 81675   NP_112305 86
M.musculus Gyg 27357 Gene Info NP_038783 86
D.melanogaster Glycogenin 37419   NP_726040 55
A.gambiae AgaP_AGAP007724 1269519   XP_308153 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)